diff --git a/crates/ui-egui/src/a11y_ui.rs b/crates/ui-egui/src/a11y_ui.rs
index 0fc8e2b2..70d14d0d 100644
--- a/crates/ui-egui/src/a11y_ui.rs
+++ b/crates/ui-egui/src/a11y_ui.rs
@@ -364,7 +364,7 @@ impl PdfCraftApp {
         };
         // Rules skipped by hand stay skipped when checking again.
         let mut report = report;
-        for r in report.results.iter_mut().filter(|r| self.a11y_skipped.contains(&r.rule)) {
+        for r in report.results.iter_mut().filter(|r| self.a11y_skipped.contains(&(id, r.rule))) {
             r.status = Status::Skipped;
             r.findings.clear();
         }
@@ -448,12 +448,12 @@ impl PdfCraftApp {
                 }
             }
             PanelAction::Skip(rule) => {
-                self.a11y_skipped.insert(rule);
-                if let Some((_, r)) = self.a11y.report.as_mut()
-                    && let Some(x) = r.results.iter_mut().find(|x| x.rule == rule)
-                {
-                    x.status = Status::Skipped;
-                    x.findings.clear();
+                if let Some((id, r)) = self.a11y.report.as_mut() {
+                    self.a11y_skipped.insert((*id, rule));
+                    if let Some(x) = r.results.iter_mut().find(|x| x.rule == rule) {
+                        x.status = Status::Skipped;
+                        x.findings.clear();
+                    }
                 }
             }
             PanelAction::Fix(rule) => {
diff --git a/crates/ui-egui/src/dialogs.rs b/crates/ui-egui/src/dialogs.rs
index 9de94341..308a88c1 100644
--- a/crates/ui-egui/src/dialogs.rs
+++ b/crates/ui-egui/src/dialogs.rs
@@ -1333,7 +1333,9 @@ fn dialogs(app: &mut PdfCraftApp, ctx: &egui::Context) {
         app.run_compare();
     }
     if a11y_now {
-        app.a11y_skipped.clear();
+        if let Some((_, id)) = app.active_ids() {
+            app.a11y_skipped.retain(|(doc, _)| *doc != id);
+        }
         app.run_accessibility_check();
     }
 }
diff --git a/crates/ui-egui/src/lib.rs b/crates/ui-egui/src/lib.rs
index ff84c3ee..fe861eda 100644
--- a/crates/ui-egui/src/lib.rs
+++ b/crates/ui-egui/src/lib.rs
@@ -647,7 +647,8 @@ pub struct PdfCraftApp {
     pub doc_js: js_ui::DocJsDraft,
     pub a11y: a11y_ui::A11yState,
     pub(crate) tags_state: tags_ui::State,
-    pub a11y_skipped: std::collections::BTreeSet<pdfcraft_engine::a11y::Rule>,
+    /// Rules skipped by hand, for the document they were skipped in.
+    pub a11y_skipped: std::collections::HashSet<(DocId, pdfcraft_engine::a11y::Rule)>,
     pub alt_draft: a11y_ui::AltDraft,
     /// List the OS key store's signing identities among the digital IDs (the desktop app).
     pub os_key_store_ids: bool,
diff --git a/crates/ui-egui/tests/accessibility.rs b/crates/ui-egui/tests/accessibility.rs
index cc235c9f..b050dd07 100644
--- a/crates/ui-egui/tests/accessibility.rs
+++ b/crates/ui-egui/tests/accessibility.rs
@@ -92,6 +92,60 @@ fn checking_fixing_skipping_and_reporting() {
     assert!(html.contains("Accessibility Report") && html.contains("Skipped"));
 }
 
+/// #1301: a rule skipped by hand is skipped for that document only. Another document checked
+/// without the options dialog reports its own result, and the first keeps its skip, even after
+/// the other is checked again through the dialog.
+#[test]
+fn a_rule_skipped_in_one_document_is_not_skipped_in_another() {
+    let mut h = Harness::builder().with_size(egui::vec2(1400.0, 900.0)).build_eframe(move |_cc| {
+        let mut app = PdfCraftApp::new();
+        app.set_option("language", "en").unwrap();
+        app.open_bytes("a.pdf", None, FIXTURE.to_vec()).unwrap();
+        app.open_bytes("b.pdf", None, FIXTURE.to_vec()).unwrap();
+        app.active = Some(0);
+        app.a11y_options.show_dialog = false;
+        app
+    });
+    h.run_steps(4);
+    let tagged = |h: &Harness<'static, PdfCraftApp>| {
+        let (id, report) = h.state().a11y.report.as_ref().unwrap();
+        assert_eq!(Some(*id), h.state().active_ids().map(|(_, id)| id), "the report is the active document's");
+        let r = report.result(Rule::TaggedPdf).unwrap();
+        (r.status, r.findings.len())
+    };
+    assert!(h.state_mut().execute("a11y.check"));
+    h.run_steps(3);
+    assert_eq!(h.state().dialog, None);
+    right_click(&mut h, "Tagged PDF - Failed");
+    h.get_by_label("Skip Rule").click();
+    h.run_steps(2);
+    assert_eq!(tagged(&h), (Status::Skipped, 0));
+
+    h.state_mut().active = Some(1);
+    h.run_steps(2);
+    assert!(h.state_mut().execute("a11y.check"));
+    h.run_steps(3);
+    assert_eq!(h.state().dialog, None);
+    assert_eq!(tagged(&h), (Status::Failed, 2), "b.pdf's own result");
+    // Starting again from the options dialog forgets b.pdf's skips, not a.pdf's.
+    right_click(&mut h, "Tagged PDF - Failed");
+    h.get_by_label("Skip Rule").click();
+    h.run_steps(2);
+    assert_eq!(tagged(&h), (Status::Skipped, 0));
+    h.state_mut().a11y_options.show_dialog = true;
+    assert!(h.state_mut().execute("a11y.check"));
+    h.run_steps(2);
+    h.get_by_label("Start Checking").click();
+    h.run_steps(3);
+    assert_eq!(tagged(&h), (Status::Failed, 2));
+
+    h.state_mut().active = Some(0);
+    h.run_steps(2);
+    h.state_mut().run_accessibility_check();
+    h.run_steps(2);
+    assert_eq!(tagged(&h), (Status::Skipped, 0), "a.pdf keeps its skip");
+}
+
 #[test]
 fn checker_summary_does_not_hide_manual_review() {
     let mut h = Harness::builder().with_size(egui::vec2(1400.0, 900.0)).build_eframe(move |_cc| {