Add the verify_managed_native_boundaries workflow for comparing authenticated inspect_managed_native_boundaries Evidence with supplied native export or function Evidence. The workflow verifies only P/Invoke declaration names against observed native symbols, keeps verified, inferred, contradicted, unresolved, and unsupported-native states explicit, and does not translate managed metadata tokens or RVAs into native addresses.
Expose schema-identical MCP and CLI surfaces, update managed workflow contracts, product catalog facts, TypeDoc output, README/localized docs, ADR status, package verification, and the REA analysis skill metadata for the 90-tool/50-command inventory.
Verification: npx vitest run tests/managedNativeVerification.test.ts --coverage=false; npm run typecheck; npm run docs:generate; npm run check (first run hit a load-sensitive sessionMcp timeout, isolated rerun passed); npx vitest run tests/sessionMcp.test.ts --coverage=false; npm run check; npm run knip; npm run jscpd; npm run scan:todos; npm run verify:managed; CXX=/usr/bin/g++-13 CC=/usr/bin/gcc-13 npm run verify:package.
BREAKING CHANGE: comparison tools now require session-owned Evidence IDs or approved bundle paths, and structured Evidence results use compact references.
Expose one plan/execute replay contract through both CLI and MCP with exact source, input, runtime, sandbox, limit, and export commitments.
Run selected ESM and extracted CommonJS/Rspack factories in a disposable Linux x64 Bubblewrap namespace with a content-addressed Node ELF closure, architecture-checked seccomp, delegated systemd cgroup limits, bounded protocol capture, cancellation, and observable cleanup.
Preserve left and right observations as Evidence, derive differential comparisons without erasing unknowns, add optional separately authorized reproducers, and fail closed on stale plans or unavailable host boundaries.
Add source-owned parser, sanitizer, clipboard, denial, timeout, OOM, protocol-forgery, and cancellation coverage; a real Linux verifier and workflow; regenerated catalogs and TypeDoc; and updated the packaged REA analysis skill for the 83-tool inventory.
Derive package, tool-family, provider, setup-client, schema-version, and CLI facts from the runtime contract sources into a deterministic checked-in catalog.
Add non-mutating generated-file checks, exact TypeDoc regenerate-and-compare validation, caller-visible documentation fact checks, and CI enforcement through docs:check.
Cover command-router parity, source-derived catalog values, deliberate documentation drift, and stale generated artifacts while preserving runtime behavior.
- Restore Linux hopper guards in scripts/verify-package.mjs so the packaged E2E handles the unsupported_hopper_build response on Linux.
- Keep the config symlink lifecycle check from PR-225 by preserving the pre-existing `existing` key when the failure-recovery test rewrites the cursor symlink target.
- Guard the packaged search command behind process.platform !== "linux".
- Adapt MCP current/batch verification to the Linux "not supported for unattended Linux analysis" rejection.
The setup plan was still advertising configure_client actions for clients
whose MCP registration already matched the desired command and Hopper
environment. As a result, an otherwise idempotent rerun requested
confirmation for changes that would not be applied.
- add SetupHost#clientNeedsConfigure to read a client config without
mutating it
- filter detected clients in discoverSetupActions before building the plan
- align the package verifier's "aligned" run with the platform-specific
status so Linux (where the fake Hopper path is unsupported) is expected
to report needs_human while keeping an empty plan
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