* fix(hopper): report unavailable procedure body coverage
* refactor!: simplify runtime tools and remove replay engines
Keep direct inspection, capture, and comparison tools. Bind handlers to named contracts and let agents compose experiments with commands and local fixture servers.
BREAKING CHANGE: Remove controlled replay, Node characterization, finite replay-machine, managed runtime planning, and redundant string-tracing tools. Retire process replay, shims, reactive scenarios, custom checkpoints, and active browser replay and origin-scope inputs.
Add the verify_managed_native_boundaries workflow for comparing authenticated inspect_managed_native_boundaries Evidence with supplied native export or function Evidence. The workflow verifies only P/Invoke declaration names against observed native symbols, keeps verified, inferred, contradicted, unresolved, and unsupported-native states explicit, and does not translate managed metadata tokens or RVAs into native addresses.
Expose schema-identical MCP and CLI surfaces, update managed workflow contracts, product catalog facts, TypeDoc output, README/localized docs, ADR status, package verification, and the REA analysis skill metadata for the 90-tool/50-command inventory.
Verification: npx vitest run tests/managedNativeVerification.test.ts --coverage=false; npm run typecheck; npm run docs:generate; npm run check (first run hit a load-sensitive sessionMcp timeout, isolated rerun passed); npx vitest run tests/sessionMcp.test.ts --coverage=false; npm run check; npm run knip; npm run jscpd; npm run scan:todos; npm run verify:managed; CXX=/usr/bin/g++-13 CC=/usr/bin/gcc-13 npm run verify:package.