* fix(hopper): report unavailable procedure body coverage
* refactor!: simplify runtime tools and remove replay engines
Keep direct inspection, capture, and comparison tools. Bind handlers to named contracts and let agents compose experiments with commands and local fixture servers.
BREAKING CHANGE: Remove controlled replay, Node characterization, finite replay-machine, managed runtime planning, and redundant string-tracing tools. Retire process replay, shims, reactive scenarios, custom checkpoints, and active browser replay and origin-scope inputs.
Add the verify_managed_native_boundaries workflow for comparing authenticated inspect_managed_native_boundaries Evidence with supplied native export or function Evidence. The workflow verifies only P/Invoke declaration names against observed native symbols, keeps verified, inferred, contradicted, unresolved, and unsupported-native states explicit, and does not translate managed metadata tokens or RVAs into native addresses.
Expose schema-identical MCP and CLI surfaces, update managed workflow contracts, product catalog facts, TypeDoc output, README/localized docs, ADR status, package verification, and the REA analysis skill metadata for the 90-tool/50-command inventory.
Verification: npx vitest run tests/managedNativeVerification.test.ts --coverage=false; npm run typecheck; npm run docs:generate; npm run check (first run hit a load-sensitive sessionMcp timeout, isolated rerun passed); npx vitest run tests/sessionMcp.test.ts --coverage=false; npm run check; npm run knip; npm run jscpd; npm run scan:todos; npm run verify:managed; CXX=/usr/bin/g++-13 CC=/usr/bin/gcc-13 npm run verify:package.
BREAKING CHANGE: comparison tools now require session-owned Evidence IDs or approved bundle paths, and structured Evidence results use compact references.
- Restore Linux hopper guards in scripts/verify-package.mjs so the packaged E2E handles the unsupported_hopper_build response on Linux.
- Keep the config symlink lifecycle check from PR-225 by preserving the pre-existing `existing` key when the failure-recovery test rewrites the cursor symlink target.
- Guard the packaged search command behind process.platform !== "linux".
- Adapt MCP current/batch verification to the Linux "not supported for unattended Linux analysis" rejection.
The setup plan was still advertising configure_client actions for clients
whose MCP registration already matched the desired command and Hopper
environment. As a result, an otherwise idempotent rerun requested
confirmation for changes that would not be applied.
- add SetupHost#clientNeedsConfigure to read a client config without
mutating it
- filter detected clients in discoverSetupActions before building the plan
- align the package verifier's "aligned" run with the platform-specific
status so Linux (where the fake Hopper path is unsupported) is expected
to report needs_human while keeping an empty plan
morluto
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